Programme: Monday 21 April 2008
| 08:30 | Session 3 - iGEM Chairs: Richard Kitney and Paul Freemont, Imperial College London, UK |
| 08:30 | (3.1) A Synthetic Biology Approach to the Design and Construction of a Self-Powered Environmental Pollutions Sensor - A Gold-medal and First-prize project in Environmental track in the iGEM 2007 competition
X Gu, S Ramsay, M Trybilo, D Gilbert, University of Glasgow, UK |
| 08:45 | (3.2) 2007 Virginia Genetically Engineered Machine Team (University of Virginia)
G H McArthur, K P Hershey, A E Schell, R P Khan, E Ruhi, University of Virginia, USA |
| 09:00 | (3.3) Inferring Closed-Loop Responses from Open-Loop Characteristics for a Family of Synthetic Transcriptional Feedback Systems
N Rai, K Ramkumar, K V Venkatesh, Indian Institute of Technology Bombay, India, S Dhabolkar, M Thattai, National Centre for Biological Sciences, India, V Sreenivasan, St. Xavier's, India |
| 09:15 | (3.4) Bacteria Online – University of Cambridge iGEM 2007 Project
Y Han, N Hengrung, Y J Liew, S May, Y Miao, S Milde, X Soh, L Soirez, D F Wyatt, Z Zhao, J Ajioka, J R Brown, J M Goncalves, J Haseloff, G Micklem, T D Southall, University of Cambridge, UK, D Malyshev, University of Sheffield, UK, J Crowe, University of Nottingham, UK, L Wernisch, MRC Biostatistics Unit, UK |
| 09:30 | (3.5) A Synthetic Genetic Circuit to Implement a Schmitt Trigger in E.coli
F Ceroni, A Pasini, C Nardini, F Pasqualini, G Costa, E Giordano, S Cavalcanti, University of Bologna, Italy |
| 09:45 | (3.6) iGEM 2007 Grand Prize and Best Information Processing Project: Towards Self-Differentiated Bacterial Assembly-Line
Y Yang, C Lou, X Liu, Peking University, China |
| 10:00 | (3.7) Creating a Copper Biosensor based on E.coli Cu-Sensitive Element and Bacteriophage Lysogenity Control System
P V Afanasyev, E A Zatulovskiy, E V Kuznetsov, S V Lvovskaya, A V Sabantsev, G A Zakharov, A N Skvortsov, Saint-Petersburg State Polytechnical University, Russia, M A Ditina, Research Institute of Experimental Medicine, Russia, T N Moiseeva, V S Romanov, A V Shalygin, Institute of Cytology, Russia |
| 10:15 | (3.8) Cell-Free Biofilm Biosensor for Urinary Catheter Infections
J Chappell, L Hadjilucas, J J Karcz, A Lazzaro, P Pey, D van Swaay, M T Tariq, B Y Tew, C K Tong, A R C Wong, V Rouilly, M Bultelle, K Jensen, D Lu, P Freemont, R I Kitney, Imperial College London, UK |
| 10:30 | Refreshments |
| 11:00 | Session 4 - Systems Biology I
Chair: Tom Freeman, University of Edinburgh, UK |
| 11:00 | (4.1) Network Modelling of Macrophage Systems
T Freeman, University of Edinburgh, UK |
| 11:45 | (4.2) Human Metabolic Network-based Analysis of Drug Responses
M L Mo, N Jamshidi, S A Becker, B O Palsson, M J Herrgard, University of California, San Diego, USA |
| 12:10 | (4.3) A Systems Biology Approach to Understanding the Pathway by which a Biogenic Organophosphonate is Produced during Metabolism of 2AEP in S. Meliloti 1021
N G Ternan, University of Ulster, UK, M McAfee, Queen's University Belfast, UK |
| 12:35 | (4.4) Computational Prediction of Essential Amino Acids in Streptococcus Agalactiae
A Gevorgyan, D A Fell, M G Poolman, Oxford Brookes University, UK, M A Anthony, Birmingham Women's Health Care Trust, UK |
| 13:00 | Lunch
Followed by Workshop sessions (see Workshop page for details) |
| 14:00 | Workshop Session 1 |
| W1
- Deciphering Metabolic Network Robustness
L M Blank, B E Ebert, S Sudarsan, A Schmid, Technische Universität Dortmund and ISAS-Institute for Analytical Sciences, Germany. |
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| W2
- Modelling and Simulation with MATLAB and SimBiology
S L L Roberts, The MathWorks, UK |
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| W4 - Biobrick Applications and Management for Everyday Research R Grünberg, L Serrano, CRG, Centre de Regulacio Genomica, Spain |
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| W7 - CAD of Synthetic Genetic Systems J Peccoud, Virginia Bioinformatics Institute at Virginia Tech, USA |
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| W8 - iGEM Workshop J Brown, University of Cambridge, UK |
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| 16:00 | Refreshments |
| 16:30 | Workshop Session 2 |
| W5 - A Structured Approach for the Engineering of Biochemical Network Models, Illustrated for Signalling Pathways D R Gilbert, X Gu, M Trybilo, R Donaldson, R Orton, University of Glasgow, UK, M Heiner, Brandenburg University of Technology, Germany, R Breitling, University of Groningen, Netherlands |
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| W6 - A Beginner's Guide to Open Science: Not for Beginners but by Beginners C Neylon, Rutherford Appleton Laboratory, UK |
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| W7 - CAD of Synthetic Genetic Systems J Peccoud, Virginia Bioinformatics Institute at Virginia Tech, USA |
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| W3 - A Quantitative Model for the General mRNA Translation in Saccharomyces Cerevisiae T You, G M Coghill, A J P Brown, University of Aberdeen, UK |
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| 19:30 | Evening event - reception and meal |
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